Keywords
Skills
Skilled in working with FEBio (Finite Elements for Biomechanics) software tool
I designed a project in Molecular Modeling of Protein Interactions (Molecular Docking) and Bioinformatics during my graduation thesis.
I gained skills and competencies in Molecular Design with Deep Learning during my internships.
The knowledge, skills and competencies acquired that I worked on during my internships and work experiences:
• Bioinformatic and cheminformatic analysis of the nutraceutical database was conducted and the results of the research were published as a paper.
Kaya, I. and Colmenarejo, G. “Analysis of Nuisance Substructures and Aggregators in a Comprehensive Database of Food Chemical Compounds,” Journal of Agricultural and Food Chemistry, vol. 68, no. 33, pp. 8812–8824, Aug. 2020, doi: 10.1021/acs.jafc.0c02521.
• Deeper knowledge of Python libraries for data analysis and data visualization and chemoinformatic toolkits especially Pandas, NumPy, Matplotlib
• Deeper knowledge of Python libraries for chemoinformatic toolkits: RDKit
• Familiarization with Python Machine Learning and Deep Learning libraries: TensorFlow, Keras, Scikit-Learn
• Gaining a deeper knowledge of Python libraries for working medical imaging datasets: pydicom, SimpleITK
• Gaining a deeper knowledge of Python libraries for preprocessing of the data and image processing: scikit-image, OpenCV
• Gaining knowledge of Python Deep Learning libraries: PyTorch, PyTorch Lightning
• Working on medical image segmentation studies with CNN-based methods
• Professional usage of Git
Project history
- Gaining knowledge of Python Deep Learning libraries: PyTorch, PyTorch Lightning
- Gaining a deeper knowledge of Python libraries for preprocessing of the data and image processing: scikit-image, OpenCV
- Working on medical image segmentation studies with CNN-based methods
- Working on lung disease diagnosis studies with Deep Learning
- Professional usage of Git
- Company project reporting
- Gaining a deeper knowledge of biomedical imaging datasets and their properties
- Gaining a deeper knowledge of Python libraries for working medical imaging datasets: pydicom, SimpleITK
- Working on medical image segmentation studies with traditional methods
- Working on lung disease diagnosis studies with Deep Learning